![]() ![]() The image cytometry version allows the user to review and analyze multi-parametric data sets and relate results back to the original images.įCS Express 4 software can import comma-delimited files produced by the CellProfiler ExportToSpreadsheet module or data tool. These tools can read comma- or tab-delimited files generated by the CellProfiler ExportToSpreadsheet module or data tool.įCS Express 4 Image Cytometry (De Novo Software) provides population based analytical tools common in flow cytometry. Calc (LibreOffice) is open-source software and freely-available. Excel (Microsoft) is a general business comercial package, whereas Prism (Graphpad) is a commercial program tailored towards research scientists for statistical analyses. Spreadsheet programs like these are useful for plotting small amounts of data. Using the final building block (Define Results) of a Columbus analysis routine, data can be exported in a format that CellProfiler Analyst can read. The Columbus system (Perkin Elmer) is a universal high-volume image data storage and analysis system that brings access to images from a wide range of sources including all major high content screening instruments via the Internet. Some details on using the component are provided here. ![]() The user can run a protocol and send images to be analyzed into CellProfiler as input, and allows for images and analysis data to be retrieved from CellProfiler for downstream data workflows enabled by AEP. The Pipeline Pilot Imaging Component Collection provides a component, 'CellProfiler (on Server)', for integration with CellProfiler. The Component Collections of the Accelrys Enterprise Platform (AEP) allows researchers to build, deploy, analyze and report on complex scientific data types within the Accelrys applications framework and other third-party applications. In addition to performing image analysis to generate measurements, CellProfiler has built-in tools in the Data Tools menu to generate a few types of plots.ĬellProfiler output files in MATLAB (.mat) and HDF5 (.h5) can be opened by CellProfiler's data tools.ĬellProfiler Analyst allows analysis, exploration and machine-learning for high-dimensional image-based data.ĬellProfiler Analyst can be used with data that follows a simple format: One image table with rows of databases produced in CellProfiler using the ExportToDatabase module or data tool. Software for analyzing CellProfiler-produced data Software
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